Create a model_tasks class object. — create_model

Create a model_tasks class object.

Usage

create_model_tasks(...)

Arguments

...: objects of class model_tasks created using function create_model_task()

Value

a named list of class model_tasks.

Examples

create_model_tasks(
  create_model_task(
    task_ids = create_task_ids(
      create_task_id("origin_date",
        required = NULL,
        optional = c(
          "2023-01-02",
          "2023-01-09",
          "2023-01-16"
        )
      ),
      create_task_id("location",
        required = "US",
        optional = c("01", "02", "04", "05", "06")
      ),
      create_task_id("horizon",
        required = 1L,
        optional = 2:4
      )
    ),
    output_type = create_output_type(
      create_output_type_mean(
        is_required = TRUE,
        value_type = "double",
        value_minimum = 0L
      )
    ),
    target_metadata = create_target_metadata(
      create_target_metadata_item(
        target_id = "inc hosp",
        target_name = "Weekly incident influenza hospitalizations",
        target_units = "rate per 100,000 population",
        target_keys = NULL,
        target_type = "discrete",
        is_step_ahead = TRUE,
        time_unit = "week"
      )
    )
  )
)
#> $model_tasks
#> $model_tasks[[1]]
#> $model_tasks[[1]]$task_ids
#> $model_tasks[[1]]$task_ids$origin_date
#> $model_tasks[[1]]$task_ids$origin_date$required
#> NULL
#> 
#> $model_tasks[[1]]$task_ids$origin_date$optional
#> [1] "2023-01-02" "2023-01-09" "2023-01-16"
#> 
#> 
#> $model_tasks[[1]]$task_ids$location
#> $model_tasks[[1]]$task_ids$location$required
#> [1] "US"
#> 
#> $model_tasks[[1]]$task_ids$location$optional
#> [1] "01" "02" "04" "05" "06"
#> 
#> 
#> $model_tasks[[1]]$task_ids$horizon
#> $model_tasks[[1]]$task_ids$horizon$required
#> [1] 1
#> 
#> $model_tasks[[1]]$task_ids$horizon$optional
#> [1] 2 3 4
#> 
#> 
#> 
#> $model_tasks[[1]]$output_type
#> $model_tasks[[1]]$output_type$mean
#> $model_tasks[[1]]$output_type$mean$output_type_id
#> $model_tasks[[1]]$output_type$mean$output_type_id$required
#> [1] NA
#> 
#> $model_tasks[[1]]$output_type$mean$output_type_id$optional
#> NULL
#> 
#> 
#> $model_tasks[[1]]$output_type$mean$value
#> $model_tasks[[1]]$output_type$mean$value$type
#> [1] "double"
#> 
#> $model_tasks[[1]]$output_type$mean$value$minimum
#> [1] 0
#> 
#> 
#> 
#> 
#> $model_tasks[[1]]$target_metadata
#> $model_tasks[[1]]$target_metadata[[1]]
#> $model_tasks[[1]]$target_metadata[[1]]$target_id
#> [1] "inc hosp"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_name
#> [1] "Weekly incident influenza hospitalizations"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_units
#> [1] "rate per 100,000 population"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_keys
#> NULL
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_type
#> [1] "discrete"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$is_step_ahead
#> [1] TRUE
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$time_unit
#> [1] "week"
#> 
#> 
#> 
#> 
#> 
#> attr(,"class")
#> [1] "model_tasks" "list"       
#> attr(,"n")
#> [1] 1
#> attr(,"schema_id")
#> [1] "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v2.0.1/tasks-schema.json"
create_model_tasks(
  create_model_task(
    task_ids = create_task_ids(
      create_task_id("origin_date",
        required = NULL,
        optional = c(
          "2023-01-02",
          "2023-01-09",
          "2023-01-16"
        )
      ),
      create_task_id("location",
        required = "US",
        optional = c("01", "02", "04", "05", "06")
      ),
      create_task_id("target",
        required = NULL,
        optional = c("inc death", "inc hosp")
      ),
      create_task_id("horizon",
        required = 1L,
        optional = 2:4
      )
    ),
    output_type = create_output_type(
      create_output_type_mean(
        is_required = TRUE,
        value_type = "double",
        value_minimum = 0L
      ),
      create_output_type_median(
        is_required = FALSE,
        value_type = "double"
      ),
      create_output_type_quantile(
        required = c(0.25, 0.5, 0.75),
        optional = c(
          0.1, 0.2, 0.3, 0.4, 0.6,
          0.7, 0.8, 0.9
        ),
        value_type = "double",
        value_minimum = 0
      )
    ),
    target_metadata = create_target_metadata(
      create_target_metadata_item(
        target_id = "inc hosp",
        target_name = "Weekly incident influenza hospitalizations",
        target_units = "rate per 100,000 population",
        target_keys = list(target = "inc hosp"),
        target_type = "discrete",
        is_step_ahead = TRUE,
        time_unit = "week"
      ),
      create_target_metadata_item(
        target_id = "inc death",
        target_name = "Weekly incident influenza deaths",
        target_units = "rate per 100,000 population",
        target_keys = list(target = "inc death"),
        target_type = "discrete",
        is_step_ahead = TRUE,
        time_unit = "week"
      )
    )
  ),
  create_model_task(
    task_ids = create_task_ids(
      create_task_id("origin_date",
        required = NULL,
        optional = c(
          "2023-01-02",
          "2023-01-09",
          "2023-01-16"
        )
      ),
      create_task_id("location",
        required = "US",
        optional = c("01", "02", "04", "05", "06")
      ),
      create_task_id("target",
        required = "flu hosp rt chng",
        optional = NULL
      ),
      create_task_id("horizon",
        required = 1L,
        optional = 2:4
      )
    ),
    output_type = create_output_type(
      create_output_type_pmf(
        required = c(
          "large_decrease",
          "decrease",
          "stable",
          "increase",
          "large_increase"
        ),
        optional = NULL,
        value_type = "double"
      )
    ),
    target_metadata = create_target_metadata(
      create_target_metadata_item(
        target_id = "flu hosp rt chng",
        target_name = "Weekly influenza hospitalization rate change",
        target_units = "rate per 100,000 population",
        target_keys = list(target = "flu hosp rt chng"),
        target_type = "nominal",
        is_step_ahead = TRUE,
        time_unit = "week"
      )
    )
  )
)
#> $model_tasks
#> $model_tasks[[1]]
#> $model_tasks[[1]]$task_ids
#> $model_tasks[[1]]$task_ids$origin_date
#> $model_tasks[[1]]$task_ids$origin_date$required
#> NULL
#> 
#> $model_tasks[[1]]$task_ids$origin_date$optional
#> [1] "2023-01-02" "2023-01-09" "2023-01-16"
#> 
#> 
#> $model_tasks[[1]]$task_ids$location
#> $model_tasks[[1]]$task_ids$location$required
#> [1] "US"
#> 
#> $model_tasks[[1]]$task_ids$location$optional
#> [1] "01" "02" "04" "05" "06"
#> 
#> 
#> $model_tasks[[1]]$task_ids$target
#> $model_tasks[[1]]$task_ids$target$required
#> NULL
#> 
#> $model_tasks[[1]]$task_ids$target$optional
#> [1] "inc death" "inc hosp" 
#> 
#> 
#> $model_tasks[[1]]$task_ids$horizon
#> $model_tasks[[1]]$task_ids$horizon$required
#> [1] 1
#> 
#> $model_tasks[[1]]$task_ids$horizon$optional
#> [1] 2 3 4
#> 
#> 
#> 
#> $model_tasks[[1]]$output_type
#> $model_tasks[[1]]$output_type$mean
#> $model_tasks[[1]]$output_type$mean$output_type_id
#> $model_tasks[[1]]$output_type$mean$output_type_id$required
#> [1] NA
#> 
#> $model_tasks[[1]]$output_type$mean$output_type_id$optional
#> NULL
#> 
#> 
#> $model_tasks[[1]]$output_type$mean$value
#> $model_tasks[[1]]$output_type$mean$value$type
#> [1] "double"
#> 
#> $model_tasks[[1]]$output_type$mean$value$minimum
#> [1] 0
#> 
#> 
#> 
#> $model_tasks[[1]]$output_type$median
#> $model_tasks[[1]]$output_type$median$output_type_id
#> $model_tasks[[1]]$output_type$median$output_type_id$required
#> NULL
#> 
#> $model_tasks[[1]]$output_type$median$output_type_id$optional
#> [1] NA
#> 
#> 
#> $model_tasks[[1]]$output_type$median$value
#> $model_tasks[[1]]$output_type$median$value$type
#> [1] "double"
#> 
#> 
#> 
#> $model_tasks[[1]]$output_type$quantile
#> $model_tasks[[1]]$output_type$quantile$output_type_id
#> $model_tasks[[1]]$output_type$quantile$output_type_id$required
#> [1] 0.25 0.50 0.75
#> 
#> $model_tasks[[1]]$output_type$quantile$output_type_id$optional
#> [1] 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9
#> 
#> 
#> $model_tasks[[1]]$output_type$quantile$value
#> $model_tasks[[1]]$output_type$quantile$value$type
#> [1] "double"
#> 
#> $model_tasks[[1]]$output_type$quantile$value$minimum
#> [1] 0
#> 
#> 
#> 
#> 
#> $model_tasks[[1]]$target_metadata
#> $model_tasks[[1]]$target_metadata[[1]]
#> $model_tasks[[1]]$target_metadata[[1]]$target_id
#> [1] "inc hosp"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_name
#> [1] "Weekly incident influenza hospitalizations"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_units
#> [1] "rate per 100,000 population"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_keys
#> $model_tasks[[1]]$target_metadata[[1]]$target_keys$target
#> [1] "inc hosp"
#> 
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_type
#> [1] "discrete"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$is_step_ahead
#> [1] TRUE
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$time_unit
#> [1] "week"
#> 
#> 
#> $model_tasks[[1]]$target_metadata[[2]]
#> $model_tasks[[1]]$target_metadata[[2]]$target_id
#> [1] "inc death"
#> 
#> $model_tasks[[1]]$target_metadata[[2]]$target_name
#> [1] "Weekly incident influenza deaths"
#> 
#> $model_tasks[[1]]$target_metadata[[2]]$target_units
#> [1] "rate per 100,000 population"
#> 
#> $model_tasks[[1]]$target_metadata[[2]]$target_keys
#> $model_tasks[[1]]$target_metadata[[2]]$target_keys$target
#> [1] "inc death"
#> 
#> 
#> $model_tasks[[1]]$target_metadata[[2]]$target_type
#> [1] "discrete"
#> 
#> $model_tasks[[1]]$target_metadata[[2]]$is_step_ahead
#> [1] TRUE
#> 
#> $model_tasks[[1]]$target_metadata[[2]]$time_unit
#> [1] "week"
#> 
#> 
#> 
#> 
#> $model_tasks[[2]]
#> $model_tasks[[2]]$task_ids
#> $model_tasks[[2]]$task_ids$origin_date
#> $model_tasks[[2]]$task_ids$origin_date$required
#> NULL
#> 
#> $model_tasks[[2]]$task_ids$origin_date$optional
#> [1] "2023-01-02" "2023-01-09" "2023-01-16"
#> 
#> 
#> $model_tasks[[2]]$task_ids$location
#> $model_tasks[[2]]$task_ids$location$required
#> [1] "US"
#> 
#> $model_tasks[[2]]$task_ids$location$optional
#> [1] "01" "02" "04" "05" "06"
#> 
#> 
#> $model_tasks[[2]]$task_ids$target
#> $model_tasks[[2]]$task_ids$target$required
#> [1] "flu hosp rt chng"
#> 
#> $model_tasks[[2]]$task_ids$target$optional
#> NULL
#> 
#> 
#> $model_tasks[[2]]$task_ids$horizon
#> $model_tasks[[2]]$task_ids$horizon$required
#> [1] 1
#> 
#> $model_tasks[[2]]$task_ids$horizon$optional
#> [1] 2 3 4
#> 
#> 
#> 
#> $model_tasks[[2]]$output_type
#> $model_tasks[[2]]$output_type$pmf
#> $model_tasks[[2]]$output_type$pmf$output_type_id
#> $model_tasks[[2]]$output_type$pmf$output_type_id$required
#> [1] "large_decrease" "decrease"       "stable"         "increase"      
#> [5] "large_increase"
#> 
#> $model_tasks[[2]]$output_type$pmf$output_type_id$optional
#> NULL
#> 
#> 
#> $model_tasks[[2]]$output_type$pmf$value
#> $model_tasks[[2]]$output_type$pmf$value$type
#> [1] "double"
#> 
#> $model_tasks[[2]]$output_type$pmf$value$minimum
#> [1] 0
#> 
#> $model_tasks[[2]]$output_type$pmf$value$maximum
#> [1] 1
#> 
#> 
#> 
#> 
#> $model_tasks[[2]]$target_metadata
#> $model_tasks[[2]]$target_metadata[[1]]
#> $model_tasks[[2]]$target_metadata[[1]]$target_id
#> [1] "flu hosp rt chng"
#> 
#> $model_tasks[[2]]$target_metadata[[1]]$target_name
#> [1] "Weekly influenza hospitalization rate change"
#> 
#> $model_tasks[[2]]$target_metadata[[1]]$target_units
#> [1] "rate per 100,000 population"
#> 
#> $model_tasks[[2]]$target_metadata[[1]]$target_keys
#> $model_tasks[[2]]$target_metadata[[1]]$target_keys$target
#> [1] "flu hosp rt chng"
#> 
#> 
#> $model_tasks[[2]]$target_metadata[[1]]$target_type
#> [1] "nominal"
#> 
#> $model_tasks[[2]]$target_metadata[[1]]$is_step_ahead
#> [1] TRUE
#> 
#> $model_tasks[[2]]$target_metadata[[1]]$time_unit
#> [1] "week"
#> 
#> 
#> 
#> 
#> 
#> attr(,"class")
#> [1] "model_tasks" "list"       
#> attr(,"n")
#> [1] 2
#> attr(,"schema_id")
#> [1] "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v2.0.1/tasks-schema.json"

Create a `model_tasks` class object.

Usage

Arguments

Value

See also

Examples